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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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204 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCC5
ENSSSCG00000011782
ENSG00000114770
ATP binding cassette subfamily C member 5
Tissue enhanced
Detected in all
lymphoid tissue:
75.2
APBB3
ENSSSCG00000014366
ENSG00000113108
Amyloid beta precursor protein binding family B member 3
Low tissue specificity
Detected in all
ATRX
ENSSSCG00000012434
ENSG00000085224
ATRX, chromatin remodeler
Low tissue specificity
Detected in all
BMP3
ENSSSCG00000029061
ENSG00000152785
Bone morphogenetic protein 3 precursor
Tissue enhanced
Detected in many
adipose tissue:
20.6
mesothelial tissue:
31.4
BTBD18
ENSSSCG00000013175
ENSG00000233436
BTB domain containing 18
Low tissue specificity
Detected in many
C11orf65
ENSSSCG00000015008
ENSG00000166323
Chromosome 11 open reading frame 65
Low tissue specificity
Detected in all
C20orf196
ENSSSCG00000039269
ENSG00000171984
Chromosome 20 open reading frame 196
Low tissue specificity
Detected in all
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
CARF
ENSSSCG00000016117
ENSG00000138380
Calcium responsive transcription factor
Low tissue specificity
Detected in all
CCDC126
ENSSSCG00000029174
ENSG00000169193
Coiled-coil domain containing 126
Tissue enhanced
Detected in all
pineal gland:
42.0
retina:
37.1
CCDC18
ENSSSCG00000006897
ENSG00000122483
Coiled-coil domain containing 18
Tissue enhanced
Detected in all
testis:
33.2
CCDC66
ENSSSCG00000021439
ENSG00000180376
Coiled-coil domain containing 66
Low tissue specificity
Detected in all
CERS4
ENSSSCG00000013595
ENSG00000090661
Ceramide synthase 4
Tissue enriched
Detected in many
epididymis:
111.9
CHST9
ENSSSCG00000003721
ENSG00000154080
Carbohydrate sulfotransferase 9
Tissue enhanced
Detected in many
endometrium:
15.0
fallopian tube:
29.3
gallbladder:
24.9
pituitary gland:
14.7
COG6
ENSSSCG00000009369
ENSG00000133103
Component of oligomeric golgi complex 6
Low tissue specificity
Detected in all
CXorf57
ENSSSCG00000012549
ENSG00000147231
Chromosome X open reading frame 57
Low tissue specificity
Detected in all
DMTF1
ENSSSCG00000015393
ENSG00000135164
Cyclin D binding myb like transcription factor 1
Low tissue specificity
Detected in all
DNASE1
ENSSSCG00000036527
ENSG00000213918
Deoxyribonuclease-1 precursor
Low tissue specificity
Detected in all
EPHX1
ENSSSCG00000010853
ENSG00000143819
Epoxide hydrolase 1 precursor
Tissue enhanced
Detected in all
choroid plexus:
175.4
liver:
129.4
FAM173B
ENSSSCG00000036387
ENSG00000150756
Family with sequence similarity 173 member B
Low tissue specificity
Detected in all
FKRP
ENSSSCG00000003103
ENSG00000181027
Fukutin related protein
Low tissue specificity
Detected in all
GALR3
ENSSSCG00000000121
ENSG00000128310
Galanin receptor 3
Low tissue specificity
Detected in many
GHRH
ENSSSCG00000007332
ENSG00000118702
Somatoliberin precursor
Tissue enhanced
Detected in many
brain:
11.2
GVQW3
ENSSSCG00000032157
ENSG00000179240
GVQW motif containing 3
Low tissue specificity
Detected in all
HESX1
ENSSSCG00000021207
ENSG00000163666
HESX homeobox 1
Low tissue specificity
Detected in all
HFM1
ENSSSCG00000006912
ENSG00000162669
HFM1, ATP dependent DNA helicase homolog
Low tissue specificity
Detected in all
HSD17B13
ENSSSCG00000009225
ENSG00000170509
17-beta-hydroxysteroid dehydrogenase 13
Tissue enhanced
Detected in all
liver:
137.5
salivary gland:
76.8
HVCN1
ENSSSCG00000009827
ENSG00000122986
Hydrogen voltage gated channel 1
Group enriched
Detected in many
choroid plexus:
88.8
lymphoid tissue:
24.2
HYKK
ENSSSCG00000001755
ENSG00000188266
Hydroxylysine kinase
Tissue enriched
Detected in all
pineal gland:
40.3
IL1RAP
ENSSSCG00000021206
ENSG00000196083
Interleukin 1 receptor accessory protein
Tissue enhanced
Detected in all
liver:
31.1
KIAA1109
ENSSSCG00000009090
ENSG00000138688
KIAA1109
Low tissue specificity
Detected in all
KIAA1958
ENSSSCG00000005469
ENSG00000165185
KIAA1958
Tissue enhanced
Detected in all
retina:
51.1
KRBA1
ENSSSCG00000034873
ENSG00000133619
KRAB-A domain containing 1
Tissue enhanced
Detected in many
male glands:
16.4
KRBA2
ENSSSCG00000021434
ENSG00000184619
KRAB-A domain containing 2
Tissue enhanced
Detected in many
male glands:
22.0
KRT39
ENSSSCG00000017458
ENSG00000196859
Keratin 39
Tissue enriched
Detected in some
skin:
36.2
KRT40
ENSSSCG00000036987
ENSG00000204889
Keratin 40
Tissue enhanced
Detected in many
skin:
31.6
L3MBTL2
ENSSSCG00000000066
ENSG00000100395
L3MBTL2, polycomb repressive complex 1 subunit
Low tissue specificity
Detected in all
LAMC3
ENSSSCG00000005710
ENSG00000050555
Laminin subunit gamma 3
Tissue enhanced
Detected in many
penis:
26.8
LRRC69
ENSSSCG00000039660
ENSG00000214954
Leucine rich repeat containing 69
Tissue enhanced
Detected in many
testis:
19.9
METTL15
ENSSSCG00000013331
ENSG00000169519
Methyltransferase like 15
Low tissue specificity
Detected in all
MLH3
ENSSSCG00000002378
ENSG00000119684
MutL homolog 3
Low tissue specificity
Detected in all
MRPS11
ENSSSCG00000037343
ENSG00000181991
28S ribosomal protein S11, mitochondrial
Low tissue specificity
Detected in all
MSH3
ENSSSCG00000014126
ENSG00000113318
MutS homolog 3
Low tissue specificity
Detected in all
MSI2
ENSSSCG00000038505
ENSG00000153944
RNA-binding protein Musashi homolog 2
Low tissue specificity
Detected in all
MUM1L1
ENSSSCG00000012548
ENSG00000157502
MUM1 like 1
Tissue enhanced
Detected in all
epididymis:
57.4
na
ENSSSCG00000001204
ENSG00000187626,ENSG00000189298
Low tissue specificity
Detected in all
na
ENSSSCG00000001431
ENSG00000204315
FK506-binding protein-like
Tissue enriched
Detected in many
testis:
43.3
na
ENSSSCG00000002709
ENSG00000135702,ENSG00000183196
Tissue enriched
Detected in many
cornea:
67.0
na
ENSSSCG00000002988
Low tissue specificity
Detected in all
na
ENSSSCG00000003741
Low tissue specificity
Detected in all
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